The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0182
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 2052675
End posion on genome 2052586
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
taatgcgcgt
tRNA gene sequence 
GCCGCGGTAGCTCAGCTGGCAGAGCGCTCGGCTGTTAACCGAGCGGTCGACGGTTCGAGT
CCGTCCCGCGGCGctc
Downstream region at tRNA end position 
ttgttttctt
Secondary structure (Cloverleaf model)
>At0182	Asn	GTT
                   t      Gctc ttgttttctt
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     G - C
                     G - C          T G
                    T     C T G C C     A
      C G A        A      | | | | |     G
    T       C T C G       G A C G G     C
    G       | | | |                 T T
    G       G A G C
      C A          G     CGGTC
                    C - G
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A *
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCGGTAGCTCAGCTGGCAGAGCGCTCGGCTGTTAacttctagttgacagagACCGAG
CGGTCGACGGTTCGAGTCCGTCCCGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK