The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0183
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 2052864
End posion on genome 2052789
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
gaagttgagc
tRNA gene sequence 
GGGGCCGTCGTCTAGTTTGGTCCAGGACGCCAGGCTTGGGCCCTGGTAATCGGGGGTTCA
AATCCCCTCGGCCCCAtct
Downstream region at tRNA end position 
tgacggctta
Secondary structure (Cloverleaf model)
>At0183	Pro	TGG
                   c      Atct tgacggctta
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     T C C C C     A
    T T G A        C      + | | | |     A
  T         T C T G       G G G G G     C
  G         + | | |                 T T
  G         G G A C
    T C C A        G     TAATC
                    C - G
                    C - G
                    A - T
                    G - C
                    G - C
                  C       C
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTCGTCTAGTTTGGTCCAGGACGCCAGGCTTGGGCCCTGGTAATCGGGGGTTCA
AATCCCCTCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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