The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0184
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 2077669
End posion on genome 2077538
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position
gatcggtaat
tRNA gene sequence
GGGCCCATAGCTCAGCCAGGTTAGAGTGCTGGGCTCCAGACCCAGTGGTCCGGGGTCCGA
ATCCCCGTGGGCCCAtta
Downstream region at tRNA end position
aaatttcttg
Secondary structure (Cloverleaf model)
>At0184	Trp	CCA
                   t      Atta aaatttcttg
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     A - T          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     G
  A         C T C G       C G G G G     C
  G         | | | +                 T C
  G         G A G T
    T T A          G     TGGTC
                    C - G
                    T - A
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCATAGCTCAGCCAGGTTAGAGTGCTGGGCTCCAGatatcagcattgggtctgtcg
acccgaaaggggatgaaatatatctggaatggagagACCCAGTGGTCCGGGGTCCGAATC
CCCGTGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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