The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0185
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 2079476
End posion on genome 2079401
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
ctcataactt
tRNA gene sequence 
GCGGCCGTAGTCTAGCCTGGATTAGGACGCCTGCCTGCCACGCAGGAGGTCCCGGGTTCA
AATCCCGGCGGTCGCAcct
Downstream region at tRNA end position 
gttctccatt
Secondary structure (Cloverleaf model)
>At0185	Gly	GCC
                   t      Acct gttctccatt
                     G - C
                     C - G
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    A T T A        G     AGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  C       C
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTAGTCTAGCCTGGATTAGGACGCCTGCCTGCCACGCAGGAGGTCCCGGGTTCA
AATCCCGGCGGTCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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