The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0186
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 2154485
End posion on genome 2154411
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
tagaacttga
tRNA gene sequence 
GGGCCCGTCGTCTAGCCTGGTTAGGATGCCGCTCTGACACAGCGGAGGTCCTGGGTTCAA
ATCCCAGCGGGCCCAtac
Downstream region at tRNA end position 
ttccttgttc
Secondary structure (Cloverleaf model)
>At0186	Val	GAC
                   a      Atac ttccttgttc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G A C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C T G G G     C
  G         + | | +                 T T
  G         G G A T
    T T A          G     AGGTC
                    C - G
                    C - G
                    G - C
                    C - G
                    T - A
                  C       C
                  T       A
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTCGTCTAGCCTGGTTAGGATGCCGCTCTGACACAGCGGAGGTCCTGGGTTCAA
ATCCCAGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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