The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0188
Genome IDCP000682
Search identical group
Phylum/ClassThermoproteota
SpeciesMetallosphaera sedula DSM 5348 [CP000682]
Start position on genome 2185891
End posion on genome 2185817
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
ggttatgacg
tRNA gene sequence 
GGACCCGTAGCTCAGCCAGGATAGAGCGTAGGCCTCCGGAGCCTAAGGTCCCGGGTCCGA
ATCCCGGCGGGTCCGatg
Downstream region at tRNA end position 
tgggggacac
Secondary structure (Cloverleaf model)
>At0188	Arg	CCG
                   g      Gatg tgggggacac
                     G - C
                     G - C
                     A - T
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     G
  A         C T C G       C C G G G     C
  G         | | | |                 T C
  G         G A G C
    A T A          G     AGGTC
                    T - A
                    A - T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGACCCGTAGCTCAGCCAGGATAGAGCGTAGGCCTCCGGAGCCTAAGGTCCCGGGTCCGA
ATCCCGGCGGGTCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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