The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0190
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 320578
End posion on genome 320651
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
attaggaaga
tRNA gene sequence 
GGGGCCGTAGTCTAGCCTGGTAGGATGCGCGGTTCGGGTCCGCGTGATCCCGGGTTCAAA
TCCCGGCGGCCCCAttc
Downstream region at tRNA end position 
ttaactctag
Secondary structure (Cloverleaf model)
>At0190	Pro	CGG
                   a      Attc ttaactctag
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       T C T G       C C G G G     C
    T       + | | +                 T T
    G       G G A T
      G T A        G     TGATC
                    C - G
                    G - C
                    C - G
                    G - C
                    G - C
                  T       T
                  T       G
                    C G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCCTGGTAGGATGCGCGGTTCGGGTCCGCGTGATCCCGGGTTCAAA
TCCCGGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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