The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0191
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 487826
End posion on genome 487945
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
gagaggggga
tRNA gene sequence 
GCCCCGGTAGTCTAGCCCGGACAAGGATGTGGGCCTTTCGAGCCCATGACCCGGGTTCAA
ATCCCGGCCGGGGCACCA
Downstream region at tRNA end position 
ccatttttct
Secondary structure (Cloverleaf model)
>At0191	Glu	TTC
                   a      ACCA ccatttttct
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    A C A A        G     TGAC
                    T - A
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCgtggccagccggccactccaaCCGGTAGTCTAGCCCGGACAAGGATGTGGGCCTTTC
GAGCCCATGACCCGGGTTCAAaggcggagatccgccgtatacATCCCGGCCGGGGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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