The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0193
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1055185
End posion on genome 1055256
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
aagcagataa
tRNA gene sequence 
GGGCCCGTAGTCTAGCGGTATGATGCCCGCCTCACGCGCGGGTGGTCCCGGGTTCAAATC
CCGGCGGGCCCAcct
Downstream region at tRNA end position 
ttccctcgca
Secondary structure (Cloverleaf model)
>At0193	Val	CAC
                   a      Acct ttccctcgca
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      C     T C T G       C C G G G     C
      G       | | +                 T T
      G     T G A T
        T A        G     TGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       G
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGCGGTATGATGCCCGCCTCACGCGCGGGTGGTCCCGGGTTCAAATC
CCGGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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