The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0196
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1239015
End posion on genome 1239132
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position
atagggcgaa
tRNA gene sequence
GCCCCGGTAGCTCAGCCCGGTCGGAGCGCCCGCCTTGTAAGCGGGAGGTCCCGGGTTCGA
ATCCCGGCCGGGGCTCCA
Downstream region at tRNA end position
ctcaattatt
Secondary structure (Cloverleaf model)
>At0196	Thr	TGT
                   a      TCCA ctcaattatt
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     G
  C         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T C G          G     AGGTC
                    C - G
                    C - G
                   *C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGCTCAGCCCGGTCGGAGCGCCCaggggcaaagccccgtgtagGCCTTGTAA
GCGGGAGGTCCCGGGTTCGAAggcggctttgccgccgaaacTCCCGGCCGGGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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