The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0199
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1423882
End posion on genome 1423956
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
gtaagtcaca
tRNA gene sequence 
GGGCCCGTGGCTTAGCCCGGTTAGAGCGCCCGGCTGATAACCGGGAGGTCCCGGGTTCAA
ATCCCGGCGGGCCCAcat
Downstream region at tRNA end position 
caagtatttt
Secondary structure (Cloverleaf model)
>At0199	Ile	GAT
                   a      Acat caagtatttt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  C         T T C G       C C G G G     C
  G         + | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGCTTAGCCCGGTTAGAGCGCCCGGCTGATAACCGGGAGGTCCCGGGTTCAA
ATCCCGGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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