The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0200
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1424045
End posion on genome 1424139
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
aaggactacg
tRNA gene sequence 
GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTTGCACGCGGGTGATCCCGGGTTCGAATC
CCGGCCGGTCCACCA
Downstream region at tRNA end position 
ctttcctgcc
Secondary structure (Cloverleaf model)
>At0200	Ala	TGC
                   g      ACCA ctttcctgcc
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        A A        G     TGATC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       A *
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTTGCAaggcgttacatacctaagagCGCG
GGTGATCCCGGGTTCGAATCCCGGCCGGTCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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