The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0206
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1924495
End posion on genome 1924596
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position 
ctttaagacg
tRNA gene sequence 
GGGCCCGTAGCTCAGCCTGGACAGAGCGGCGGCCTCCGGAGCCGTAGGTCGTGGGTTCGA
ATCCCACCGGGCCCGCCA
Downstream region at tRNA end position 
gtctttacgt
Secondary structure (Cloverleaf model)
>At0206	Arg	CCG
                   g      GCCA gtctttacgt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C A C C C     A
    C C G A        A      | | | | |     G
  T         C T C G       G T G G G     C
  G         | | | |                 T T
  G         G A G C
    A C A          G     AGGTC
                    G + T
                    C - G
                    G - C
                   *G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCTGGACAGAGCGGCGGtggacccggccttggtccgccgagCCTC
CGGAGCCGTAGGTCGTGGGTTCGAATCCCACCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK