The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0207
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1937685
End posion on genome 1937761
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
aataaacctg
tRNA gene sequence 
GGGGCCGTAGCTCAGCCAGGCAGAGCGGCGGGCTCCAGACCCGTAGGGCGGGGGTTCAAA
TCCCTCCGGCCCCACCA
Downstream region at tRNA end position 
cttgtccctc
Secondary structure (Cloverleaf model)
>At0207	Trp	CCA
                   g      ACCA cttgtccctc
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C T C C C     A
      C G A        A      | + | | |     A
    C       C T C G       G G G G G     C
    A       | | | |                 T T
    G       G A G C
      G C A        G     AGGGC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGCTCAGCCAGGCAGAGCGGCGGGCTCCAGACCCGTAGGGCGGGGGTTCAAA
TCCCTCCGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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