The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0208
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1959975
End posion on genome 1960062
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
tataatacag
tRNA gene sequence 
GCGGGGGTGCCCGAGCCAGGTCAAAGGGGCAGGGCTTAAGACCCTGTGGCGTAGGCCTGC
GTGGGTTCAAATCCCACCCCCCGCACCA
Downstream region at tRNA end position 
gttttctgac
Secondary structure (Cloverleaf model)
>At0208	Leu	TAA
                   g      ACCA gttttctgac
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        G      | | | | |     A
  A         G C C C       G T G G G     C
  G           | | |                 T T
  G         A G G G
    T C A A        G     TGGCGTAGGCCTGC
                    C - G
                    A - T
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCAGGTCAAAGGGGCAGGGCTTAAGACCCTGTGGCGTAGGCCTGC
GTGGGTTCAAATCCCACCCCCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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