The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0210
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 2007730
End posion on genome 2007814
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
gctggcaata
tRNA gene sequence 
GCCGGGGTGGCCGAGTTGGTCCAAGGCGCGGGCCTGCTAAGCCCGTCCCCATACGGGGGC
GTGGGTTCAAATCCCACCCCCGGCGcct
Downstream region at tRNA end position 
ttttctctta
Secondary structure (Cloverleaf model)
>At0210	Ser	GCT
                   a      Gcct ttttctctta
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    T T G A        G      | | | | |     A
  G         G C C G       G T G G G     C
  G           | | |                 T T
  T         A G G C
    C C A          G     TCCCCATACGGGGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTGGCCGAGTTGGTCCAAGGCGCGGGCCTGCTAAGCCCGTCCCCATACGGGGGC
GTGGGTTCAAATCCCACCCCCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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