The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0212
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 2028602
End posion on genome 2028700
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
ataaagcgaa
tRNA gene sequence 
GCCCCGGTAGCTCAGTCCGGCAGAGCGGCGGGCTGCAGACCCGTAGGTCCCGGGTTCAAA
TCCCGGCCGGGGCTCCA
Downstream region at tRNA end position 
ctcaattatc
Secondary structure (Cloverleaf model)
>At0212	Cys	GCA
                   a      TCCA ctcaattatc
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      T G A        A      | | | | |     A
    C       C T C G       C C G G G     C
    C       | | | |                 T T
    G       G A G C
      G C A        G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGCTCAGTCCGGCAGAGCGGCGGGCTGCAGACCCGTAGGTCCCGGGTTCAAa
ggcggctttgccgccgaatcgATCCCGGCCGGGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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