The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0214
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 2099023
End posion on genome 2099110
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
catcaaccca
tRNA gene sequence 
GCCGCCGTAGCTCAGCCCGGTTAGAGCGGCGGGCTGTTAACCCGTAGGTCCCGGGTTCAA
ATCCCGGCGGCGGCGctg
Downstream region at tRNA end position 
gactactctg
Secondary structure (Cloverleaf model)
>At0214	Asn	GTT
                   a      Gctg gactactctg
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       A *
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGCCCGGTTAGAGCGGCGGGCTGTTAacctaaggcggacACCCGTAG
GTCCCGGGTTCAAATCCCGGCGGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK