The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0215
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 21867
End posion on genome 21776
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
cctctgggta
tRNA gene sequence 
GCCGCCGTAGTCTAGCGGTTAGGATGGCGGGTTGTGGTCCCGTTGACCCGGGTTCAAATC
CCGGCGGCGGCCCCA
Downstream region at tRNA end position 
cgtctttacg
Secondary structure (Cloverleaf model)
>At0215	His	GTG
                   a      CCCA cgtctttacg
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    G       T C T G       C C G G G     C
    G       + | | +                 T T
    T       G G A T
      T A          G     TGAC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  T       T
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGTCTAGCGGTTAGGATGGCGGGTTGTGGTCCCGTTgcggcgagccgcggga
gGACCCGGGTTCAAATCCCGGCGGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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