The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0219
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 837785
End posion on genome 837670
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
atggaaacag
tRNA gene sequence 
CGGGCCGTAGCTCAGCGGTCGAGAGCGCCCGGCTGTAGACCGGGCGGTCCCGGGTTCGAA
TCCCGGCGGCCCGActa
Downstream region at tRNA end position 
gtctgccggt
Secondary structure (Cloverleaf model)
>At0219	Tyr	GTA
                   g      Acta gtctgccggt
                     C - G
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     G
    G       C T C G       C C G G G     C
    G       | | | |                 T T
    T       G A G C
      C G A        G     CGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C *
                  C       A
                  T       G
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CGGGCCGTAGCTCAGCGGTCGAGAGCGCCCGGCTGTAGACagccccctgggggacattcc
cctaaacccccagggcctgtaaCGGGCGGTCCCGGGTTCGAATCCCGGCGGCCCGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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