The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0225
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1226102
End posion on genome 1226004
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
aggctgggga
tRNA gene sequence 
GCCCCGGTAGTATAGCCCGGACTAGTATGCGGGCCTGTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGGGGCGCCA
Downstream region at tRNA end position 
accctatttt
Secondary structure (Cloverleaf model)
>At0225	Asp	GTC
                   a      GCCA accctatttt
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    A C T A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCacggtacgccgaccgctctagCCGGTAGTATAGCCCGGACTAGTATGCGGGCCTGTC
GAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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