The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0227
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1735041
End posion on genome 1734967
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
tttagcattg
tRNA gene sequence 
GCGGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGCGGTCCCGGGTTCAAATC
CCGGCGGCCGCACCA
Downstream region at tRNA end position 
tcgcttttct
Secondary structure (Cloverleaf model)
>At0227	Phe	GAA
                   g      ACCA tcgcttttct
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      C     C T C G       C C G G G     C
      G     | | | |                 T T
      G     G A G C
        G A        G     CGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGCGGTCCCGGGTTCAAATC
CCGGCGGCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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