The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0228
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1792192
End posion on genome 1792081
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position
aggcgcggac
tRNA gene sequence
GCCCCGGTAGCTCAGCCTGGTGGAGCGCCTCACTGGTAATGAGGAGGTCCCGGGTTCGAA
TCCCGGCCGGGGCTCCA
Downstream region at tRNA end position
ttcaattatc
Secondary structure (Cloverleaf model)
>At0228	Thr	GGT
                   c      TCCA ttcaattatc
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     G
    C       C T C G       C C G G G     C
    T       | | | |                 T T
    G       G A G C
      G T G        G     AGGTC
                    C - G
                    C - G
                    T - A
                    C - G
                    A - T
                  C       A *
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGCTCAGCCTGGTGGAGCGCCTCACTGGTAAaagcctccgggctaccggaTG
AGGAGGTCCCGGGTTCaggcattgccgcctaaGAATCCCGGCCGGGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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