The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0229
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1797917
End posion on genome 1797828
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
ataggcactg
tRNA gene sequence 
AGCCCGGTCGTCTAGCGGCCAAGGATGCGGGGCTCTGGACCCCGTGGCCCGGGTTCGAAT
CCCGGCCGGGCTActt
Downstream region at tRNA end position 
ccgccgacct
Secondary structure (Cloverleaf model)
>At0229	Gln	CTG
                   g      Actt ccgccgacct
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        C      | | | | |     G
    G       T C T G       C C G G G     C
    G       + | | +                 T T
    C       G G A T
      C A A        G     TGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCGGTCGTCTAGCGGCCAAcgggaaaacccggctagGGATGCGGGGCTCTGGACCCC
GTGGCCCGGGTTCGAATCCCGGCCGGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK