The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0230
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1819275
End posion on genome 1819184
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
tagcttttca
tRNA gene sequence 
GGGCCCGTAGTCTAGCGGTAGGATGCCCGCCTGACGCGCGGGTGATCCCGGGTTCAAATC
CCGGCGGGCCCAcct
Downstream region at tRNA end position 
ctctctatta
Secondary structure (Cloverleaf model)
>At0230	Val	GAC
                   a      Acct ctctctatta
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      C     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        T A        G     TGATC
                    C - G
                    C - G
                   *C - G
                    G - C
                    C - G
                  C       C
                  T       G
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGCGGTAGGATGCCCaggggcggagccccgcattaGCCTGACGCGCG
GGTGATCCCGGGTTCAAATCCCGGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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