The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0231
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1825531
End posion on genome 1825435
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
cgtcactaca
tRNA gene sequence 
GGGCCCGTAGTCTAGCGGTATGATGCCCGCCTTACACGCGGGTGGTCCCGGGTTCGAATC
CCGGCGGGCCCAttt
Downstream region at tRNA end position 
aatttgtata
Secondary structure (Cloverleaf model)
>At0231	Val	TAC
                   a      Attt aatttgtata
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     T C T G       C C G G G     C
      G       | | +                 T T
      G     T G A T
        T A        G     TGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       A *
                    T A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGCGGTATGATGCCCGCCTTACAtggcgcacccgcaacagcctaaga
gCGCGGGTGGTCCCGGGTTCGAATCCCGGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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