The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0232
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1826483
End posion on genome 1826395
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
taggactaac
tRNA gene sequence 
GGGGCCGTAGTCTAGCCTGGTAGGATGCGTGGCTTGGGCCCACGTGATCCCGGGTTCAAA
TCCCGGCGGCCCCAtct
Downstream region at tRNA end position 
acgttttatt
Secondary structure (Cloverleaf model)
>At0232	Pro	TGG
                   c      Atct acgttttatt
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    C       T C T G       C C G G G     C
    T       + | | +                 T T
    G       G G A T
      G T A        G     TGATC
                    C - G
                    G - C
                    T - A
                    G - C
                    G - C
                  C       C
                  T       G *
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCCTGGTAGGATGCGTGGCTTGGGaccgcgaggcaagagCCCACGT
GATCCCGGGTTCAAATCCCGGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK