The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0234
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1839080
End posion on genome 1839009
Amino Acid Ala
Anticodon GGC
Upstream region at tRNA start position 
tagctccaca
tRNA gene sequence 
GGGCCGGTAGTCTAGCGGAAGGATGCCCGCTTGGCGTGCGGGAGATCCCGGGTTCGAATC
CCGGCCGGTCCActa
Downstream region at tRNA end position 
tttctttaag
Secondary structure (Cloverleaf model)
>At0234	Ala	GGC
                   a      Acta tttctttaag
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        A A        G     AGATC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  T       T
                  T       G
                    G G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGTCTAGCGGAAGGATGCCCGCTTGGCGTGCGGGAGATCCCGGGTTCGAATC
CCGGCCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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