The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0235
Genome IDAE009441
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum aerophilum str. IM2 [AE009441]
Start position on genome 1960241
End posion on genome 1960166
Amino Acid Gly
Anticodon CCC
Upstream region at tRNA start position 
tctttacaca
tRNA gene sequence 
GCGGCGGTAGTCTAGCCTGGTTTAGGATGGCGGCCTCCCAAGCCGTTGATCCCGGGTTCG
AATCCCGGCCGCCGCAttg
Downstream region at tRNA end position 
gtctccgtct
Secondary structure (Cloverleaf model)
>At0235	Gly	CCC
                   a      Attg gtctccgtct
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     G
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T T T A        G     TGATC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCGGTAGTCTAGCCTGGTTTAGGATGGCGGCCTCCCAAGCCGTTGATCCCGGGTTCG
AATCCCGGCCGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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