The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0238
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 650859
End posion on genome 650930
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position
agacggtgct
tRNA gene sequence
GGGCCCGTAGTCTAGCGGTATGATGCCCGCCTCACGCGCGGGTGGTCCCGGGTTCAAATC
CCGGCGGGCCCActt
Downstream region at tRNA end position
ttgaaaaatt
Secondary structure (Cloverleaf model)
>At0238	Val	CAC
                   t      Actt ttgaaaaatt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      C     T C T G       C C G G G     C
      G       | | +                 T T
      G     T G A T
        T A        G     TGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       G
                    C A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGCGGTATGATGCCCGCCTCACGCGCGGGTGGTCCCGGGTTCAAATC
CCGGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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