The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0240
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 704452
End posion on genome 704523
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
cgtaaagcgg
tRNA gene sequence 
GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTCGCGCGCGGGAGATCCCGGGTTCGAATC
CCGGCCGGTCCActt
Downstream region at tRNA end position 
ctattaacaa
Secondary structure (Cloverleaf model)
>At0240	Ala	CGC
                   g      Actt ctattaacaa
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     G
      C     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        A A        G     AGATC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       G
                    C G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGTCTAGCGGAAGGATGCCCGCCTCGCGCGCGGGAGATCCCGGGTTCGAATC
CCGGCCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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