The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0241
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 1155235
End posion on genome 1155325
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
gaggagcccg
tRNA gene sequence 
GGGGCCGTAGTCTAGCCTGGCTAGGATGCCGGCCTGGGGCGCCGGTGATCCCGGGTTCAA
ATCCCGGCGGCCCCActg
Downstream region at tRNA end position 
accgttactt
Secondary structure (Cloverleaf model)
>At0241	Pro	GGG
                   g      Actg accgttactt
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    C T A          G     TGATC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       G *
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCCTGGCTAGGATGCCGGCCTGGGGacgaaccccgctagaaCGCCG
GTGATCCCGGGTTCAAATCCCGGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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