The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0242
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 1155444
End posion on genome 1155516
Amino Acid Gln
Anticodon CTG
Upstream region at tRNA start position 
cgtctggccc
tRNA gene sequence 
AGCCCGGTGGTCTAGCGGCCAAGGATGCGGGGCTCTGGACCCCGTGGCCCGGGTTCGAAT
CCCGGCCGGGCTActt
Downstream region at tRNA end position 
ccgaatccag
Secondary structure (Cloverleaf model)
>At0242	Gln	CTG
                   c      Actt ccgaatccag
                     A - T
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
      C G A        G      | | | | |     G
    G       T C T G       C C G G G     C
    G       + | | +                 T T
    C       G G A T
      C A A        G     TGGC
                    C - G
                    G - C
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    C T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
AGCCCGGTGGTCTAGCGGCCAAGGATGCGGGGCTCTGGACCCCGTGGCCCGGGTTCGAAT
CCCGGCCGGGCTA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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