The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0243
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 1351184
End posion on genome 1351268
Amino Acid Leu
Anticodon TAG
Upstream region at tRNA start position 
aaaacaccta
tRNA gene sequence 
GCGGGGGTGCCCGAGCCAGGTCAAAGGGGCAGGGTTTAGGTCCCTGTGGCGTAGGCCTGC
GTGGGTTCAAATCCCACCCCCCGCAtca
Downstream region at tRNA end position 
cctttctata
Secondary structure (Cloverleaf model)
>At0243	Leu	TAG
                   a      Atca cctttctata
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        G      | | | | |     A
  A         G C C C       G T G G G     C
  G           | | |                 T T
  G         A G G G
    T C A A        G     TGGCGTAGGCCTGC
                    C - G
                    A - T
                    G - C
                    G - C
                    G - C
                  T       T
                  T       G
                    T A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCAGGTCAAAGGGGCAGGGTTTAGGTCCCTGTGGCGTAGGCCTGC
GTGGGTTCAAATCCCACCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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