The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0246
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 1696536
End posion on genome 1696626
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
agaagggtag
tRNA gene sequence 
GGGGCCGTAGTCTAGCCTGGCTAGGATGCGTGGCTTGGGCCCACGTGACCCCGGGTTCAA
ATCCCGGCGGCCCCActt
Downstream region at tRNA end position 
tacgtcaagg
Secondary structure (Cloverleaf model)
>At0246	Pro	TGG
                   g      Actt tacgtcaagg
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    C T A          G     TGACC
                    C - G
                    G - C
                    T - A
                    G - C
                    G - C
                  C       C
                  T       G *
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGTCTAGCCTGGCTAGGATGCGTGGCTTGGGaccgatggggcaagaaCCCAC
GTGACCCCGGGTTCAAATCCCGGCGGCCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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