The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0250
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 78642
End posion on genome 78547
Amino Acid Glu
Anticodon TTC
Upstream region at tRNA start position 
gcgtagggga
tRNA gene sequence 
GCCCCGGTAGTCTAGCCCGGTCAAGGATGTGGGCCTTTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGGGGCAtaa
Downstream region at tRNA end position 
acatttttac
Secondary structure (Cloverleaf model)
>At0250	Glu	TTC
                   a      Ataa acatttttac
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T C A A        G     TGAC
                    T + G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCgcggcctgccggccgctccaaCCGGTAGTCTAGCCCGGTCAAGGATGTGGGCCTTTC
GAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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