The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0252
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 379366
End posion on genome 379252
Amino Acid Tyr
Anticodon GTA
Upstream region at tRNA start position 
tccgcgtgcg
tRNA gene sequence 
CGGCCCGTAGCTCAGCGGTCCAGAGCGCCCGGCTGTAGACCGGGCGGTCCCGGGTTCGAA
TCCCGGCGGGCCGAttg
Downstream region at tRNA end position 
tttccaggtt
Secondary structure (Cloverleaf model)
>At0252	Tyr	GTA
                   g      Attg tttccaggtt
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     G
    G       C T C G       C C G G G     C
    G       | | | |                 T T
    T       G A G C
      C C A        G     CGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C *
                  C       A
                  T       G
                    G T A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
CGGCCCGTAGCTCAGCGGTCCAGAGCGCCCGGCTGTAGACagcccccgggggtacatctc
caaagccccccgggcctgtagCGGGCGGTCCCGGGTTCGAATCCCGGCGGGCCGA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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