The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0254
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 572485
End posion on genome 572390
Amino Acid Glu
Anticodon CTC
Upstream region at tRNA start position 
gcgtagggga
tRNA gene sequence 
GCCCCGGTAGTCTAGCCCGGTCAAGGATGCGGGCCTCTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGGGGCAtta
Downstream region at tRNA end position 
aatttggatc
Secondary structure (Cloverleaf model)
>At0254	Glu	CTC
                   a      Atta aatttggatc
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T C T G       C C G G G     C
  G         + | | +                 T T
  G         G G A T
    T C A A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCgtggcttgccggccactccaaCCGGTAGTCTAGCCCGGTCAAGGATGCGGGCCTCTC
GAGCCCGTGACCCGGGTTCAAATCCCGGCCGGGGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK