The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0255
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 705110
End posion on genome 705033
Amino Acid Arg
Anticodon CCT
Upstream region at tRNA start position 
cttgcgggta
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGATAGAGCGGCGGCCTCCTAAGCCGTAGGTCGTGGGTTCGA
ATCCCACCGGGCCCGCCA
Downstream region at tRNA end position 
gttttctgct
Secondary structure (Cloverleaf model)
>At0255	Arg	CCT
                   a      GCCA gttttctgct
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C A C C C     A
    C C G A        A      | | | | |     G
  A         C T C G       G T G G G     C
  G         | | | |                 T T
  G         G A G C
    A T A          G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C C T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCAGGATAGAGCGGCGGCCTCCTAAGCCGTAGGTCGTGGGTTCGA
ATCCCACCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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