The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0257
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 890060
End posion on genome 889986
Amino Acid Phe
Anticodon GAA
Upstream region at tRNA start position 
ctaaaggtag
tRNA gene sequence 
GCGGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGCGGTCCCGGGTTCAAATC
CCGGCGGCCGCACCA
Downstream region at tRNA end position 
ccttctatct
Secondary structure (Cloverleaf model)
>At0257	Phe	GAA
                   g      ACCA ccttctatct
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      C     C T C G       C C G G G     C
      G     | | | |                 T T
      G     G A G C
        G A        G     CGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       G
                    G A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTAGCTCAGCGGGAGAGCGCCCGGCTGAAGACCGGGCGGTCCCGGGTTCAAATC
CCGGCGGCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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