The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0259
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 1045442
End posion on genome 1045371
Amino Acid His
Anticodon GTG
Upstream region at tRNA start position 
gatgcggaga
tRNA gene sequence 
GCCGCCGTAGTCTAGCGGTTAGGATGGCGGGTTGTGGTCCCGTTGACCCGGGTTCAAATC
CCGGCGGCGGCCcct
Downstream region at tRNA end position 
taattttcgg
Secondary structure (Cloverleaf model)
>At0259	His	GTG
                   a      Ccct taattttcgg
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     A
    G       T C T G       C C G G G     C
    G       + | | +                 T T
    T       G G A T
      T A          G     TGAC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  T       T
                  T       G
                    G T G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGTCTAGCGGTTAGGATGGCGGGTTGTGGTCCCGTTGACCCGGGTTCAAATC
CCGGCGGCGGCC
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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