The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0264
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 1380373
End posion on genome 1380299
Amino Acid Ile
Anticodon GAT
Upstream region at tRNA start position 
ataggcgaac
tRNA gene sequence 
GGGCCCGTGGCTTAGCCCGGTTAGAGCGCCCGGCTGATAACCGGGAGGTCCCGGGTTCAA
ATCCCGGCGGGCCCActg
Downstream region at tRNA end position 
tacaaagttt
Secondary structure (Cloverleaf model)
>At0264	Ile	GAT
                   c      Actg tacaaagttt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  C         T T C G       C C G G G     C
  G         + | | |                 T T
  G         G A G C
    T T A          G     AGGTC
                    C - G
                    C - G
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G A T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGCTTAGCCCGGTTAGAGCGCCCGGCTGATAACCGGGAGGTCCCGGGTTCAA
ATCCCGGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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