The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0266
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 1482289
End posion on genome 1482212
Amino Acid Arg
Anticodon CCG
Upstream region at tRNA start position
taaaacacag
tRNA gene sequence
GGGCCCGTAGCTCAGCCTGGACAGAGCGGCGGCCTCCGGAGCCGTAGGTCGTGGGTTCGA
ATCCCACCGGGCCCGCCA
Downstream region at tRNA end position
gttttcaacc
Secondary structure (Cloverleaf model)
>At0266	Arg	CCG
                   g      GCCA gttttcaacc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C A C C C     A
    C C G A        A      | | | | |     G
  T         C T C G       G T G G G     C
  G         | | | |                 T T
  G         G A G C
    A C A          G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    C C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCTGGACAGAGCGGCGGCCTCCGGAGCCGTAGGTCGTGGGTTCGA
ATCCCACCGGGCCCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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