The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0267
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 1482433
End posion on genome 1482342
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position
ctattgtaaa
tRNA gene sequence
GGGCCCGTAGTCTAGCGGTAGGATGCCCGCCTGACGCGCGGGTGATCCCGGGTTCAAATC
CCGGCGGGCCCActt
Downstream region at tRNA end position
ctcccaacca
Secondary structure (Cloverleaf model)
>At0267	Val	GAC
                   a      Actt ctcccaacca
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      C     T C T G       C C G G G     C
      G     + | | +                 T T
      G     G G A T
        T A        G     TGATC
                    C - G
                    C - G
                   *C - G
                    G - C
                    C - G
                  C       C
                  T       G
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGCGGTAGGATGCCCaggggccaagccccgcgtaaGCCTGACGCGCG
GGTGATCCCGGGTTCAAATCCCGGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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