The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0269
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 1531664
End posion on genome 1531580
Amino Acid Leu
Anticodon TAA
Upstream region at tRNA start position 
ttagaagtag
tRNA gene sequence 
GCGGGGGTGCCCGAGCCAGGTCAAAGGGGCAGGGCTTAAGACCCTGTGGCGTAGGCCTGC
GTGGGTTCGAATCCCACCCCCCGCAcct
Downstream region at tRNA end position 
tttctcttgg
Secondary structure (Cloverleaf model)
>At0269	Leu	TAA
                   g      Acct tttctcttgg
                     G - C
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     C A C C C     A
    C C G A        G      | | | | |     G
  A         G C C C       G T G G G     C
  G           | | |                 T T
  G         A G G G
    T C A A        G     TGGCGTAGGCCTGC
                    C - G
                    A - T
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    T A A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGGGGTGCCCGAGCCAGGTCAAAGGGGCAGGGCTTAAGACCCTGTGGCGTAGGCCTGC
GTGGGTTCGAATCCCACCCCCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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