The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0271
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 1623365
End posion on genome 1623289
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
aatcttgcac
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGCAGAGCGGCGGGCTCCAGACCCGTAGGGCGGGGGTTCAAA
TCCCTCCGGGCCCACCA
Downstream region at tRNA end position 
acttatcttc
Secondary structure (Cloverleaf model)
>At0271	Trp	CCA
                   c      ACCA acttatcttc
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C T C C C     A
      C G A        A      | + | | |     A
    C       C T C G       G G G G G     C
    A       | | | |                 T T
    G       G A G C
      G C A        G     AGGGC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCAGGCAGAGCGGCGGGCTCCAGACCCGTAGGGCGGGGGTTCAAA
TCCCTCCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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