The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0272
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 1693504
End posion on genome 1693410
Amino Acid Thr
Anticodon TGT
Upstream region at tRNA start position 
agaggcgcca
tRNA gene sequence 
GCCCCGGTAGCTCAGCCCGGTCGGAGCGCCCGCCTTGTAAGCGGGAGGTCCCGGGTTCGA
ATCCCGGCCGGGGCTcta
Downstream region at tRNA end position 
tacactattt
Secondary structure (Cloverleaf model)
>At0272	Thr	TGT
                   a      Tcta tacactattt
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     G
  C         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T C G          G     AGGTC
                    C - G
                    C - G
                   *C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    T G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGCTCAGCCCGGTCGGAGCGCCCaggggcaaagccccgcgaaaGCCTTGTAA
GCGGGAGGTCCCGGGTTCGAATCCCGGCCGGGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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