The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0273
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 1695126
End posion on genome 1695029
Amino Acid Val
Anticodon TAC
Upstream region at tRNA start position 
caaatgtaaa
tRNA gene sequence 
GGGCCCGTAGTCTAGCGGTTAGGATGCCCGCCTTACACGCGGGTGACCCCGGGTTCGAAT
CCCGGCGGGCCCActc
Downstream region at tRNA end position 
ctcttttgag
Secondary structure (Cloverleaf model)
>At0273	Val	TAC
                   a      Actc ctcttttgag
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
      C G A        A      | | | | |     G
    G       T C T G       C C G G G     C
    G       + | | +                 T T
    T       G G A T
      T A          G     TGACC
                    C - G
                    C - G
                    C - G
                    G - C
                    C - G
                  C       C
                  T       A *
                    T A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGTCTAGCGGTTAGGATGCCCGCCTTACAaggcgcacccgcaacagcctaag
ctCGCGGGTGACCCCGGGTTCGAATCCCGGCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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