The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0277
Genome IDCP000660
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum arsenaticum DSM 13514 [CP000660]
Start position on genome 1797349
End posion on genome 1797255
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
agaggcgcca
tRNA gene sequence 
GCCCCGGTAGCTCAGCCCGGTCGGAGCGCCCGCCTCGTAAGCGGGAGGTCCCGGGTTCGA
ATCCCGGCCGGGGCTtta
Downstream region at tRNA end position 
tcctggcaca
Secondary structure (Cloverleaf model)
>At0277	Thr	CGT
                   a      Ttta tcctggcaca
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     G
  C         C T C G       C C G G G     C
  G         | | | |                 T T
  G         G A G C
    T C G          G     AGGTC
                    C - G
                    C - G
                   *C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGCTCAGCCCGGTCGGAGCGCCCaggggcaaagccccgcgaaaGCCTCGTAA
GCGGGAGGTCCCGGGTTCGAATCCCGGCCGGGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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