The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At0283
Genome IDCP000561
Search identical group
Phylum/ClassThermoproteota
SpeciesPyrobaculum calidifontis JCM 11548 [CP000561]
Start position on genome 178202
End posion on genome 178311
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
cgaaagcaca
tRNA gene sequence 
GCCCCGGTAGTATAGCCCGGACTAGTATGCGGGCCTGTCGAGCCCGTGACCCGGGTTCAA
ATCCCGGCCGGGGCGtgg
Downstream region at tRNA end position 
ggcacccata
Secondary structure (Cloverleaf model)
>At0283	Asp	GTC
                   a      Gtgg ggcacccata
                     G - C
                     C - G
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  C         T A T G       C C G G G     C
  G         + | | +                 T T
  G         G T A T
    A C T A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    G*T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCCGGTAGTATAGCCCGGACTAGTATGCGGGCCTGacgacatagtcgggccaaTCGAG
CCCGTGACCCGGGTTCAAAagggggaccccggagaaTCCCGGCCGGGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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